ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000762395.1 ENST00000762395.1_325_354_+ 325–354 565.00 32.96 4.61 96.25 LINC02806-241 lncRNA A375 (Cell line)
ENST00000762395.1 ENST00000762395.1_325_377_+ 325–377 49.00 2.86 0.40 100.0 LINC02806-241 lncRNA A375 (Cell line)
ENST00000762395.1 ENST00000762395.1_324_357_+ 324–357 264.00 15.40 2.15 66.5 LINC02806-241 lncRNA A375 (Cell line)
ENST00000766977.1 ENST00000766977.1_604_615_+ 604–615 52.00 57.78 0.42 100.0 EHBP1-AS1-210 lncRNA A375 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_437_+ 425–437 3.00 2.07 0.02 100.0 ENST00000770398 lncRNA A375 (Cell line)
ENST00000770398.1 ENST00000770398.1_481_509_+ 481–509 53.00 36.55 0.43 100.0 ENST00000770398 lncRNA A375 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_456_+ 425–456 1.00 0.69 0.01 100.0 ENST00000770398 lncRNA A375 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1611_+ 1591–1611 34.00 6.55 0.28 100.0 ENST00000771298 lncRNA A375 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 204.00 39.31 1.67 87.18 ENST00000771298 lncRNA A375 (Cell line)
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 4.00 0.77 0.03 100.0 ENST00000771298 lncRNA A375 (Cell line)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 380.00 46.40 3.10 100.0 ENST00000772672 lncRNA A375 (Cell line)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 1.00 0.12 0.01 100.0 ENST00000772672 lncRNA A375 (Cell line)
ENST00000772672.1 ENST00000772672.1_91_113_+ 91–113 5.00 0.61 0.04 100.0 ENST00000772672 lncRNA A375 (Cell line)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 10.00 35.71 0.08 100.0 ENST00000773843 lncRNA A375 (Cell line)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 45.00 0.01 0.37 100.0 SNHG12-223 lncRNA A375 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 82869.00 24.49 676.37 77.38 SNHG12-223 lncRNA A375 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 254057.00 75.07 2073.58 98.52 SNHG12-223 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 125.00 0.01 1.02 100.0 SNHG25-206 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 1822861.00 88.49 14877.97 88.9 SNHG25-206 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 79.00 0.00 0.64 100.0 SNHG25-206 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 172.60 0.01 1.41 56.22 SNHG25-206 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 334.57 0.02 2.73 68.84 SNHG25-206 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 209.91 0.01 1.71 29.03 SNHG25-206 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 536.00 0.03 4.37 97.45 SNHG25-206 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 169.00 0.01 1.38 100.0 SNHG25-206 lncRNA A375 (Cell line)