ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 15.00 1.98 0.12 100.0 SNHG16-266 lncRNA A375 (Cell line)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 32.00 29.91 0.26 100.0 NR2F2-AS1-327 lncRNA A375 (Cell line)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 90.00 8.66 0.73 46.63 ENST00000747675 lncRNA A375 (Cell line)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 331.00 31.86 2.70 100.0 ENST00000747675 lncRNA A375 (Cell line)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 60.00 5.77 0.49 40.0 ENST00000747675 lncRNA A375 (Cell line)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 43.00 4.14 0.35 32.33 ENST00000747675 lncRNA A375 (Cell line)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 133.00 12.80 1.09 100.0 ENST00000747675 lncRNA A375 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 8.00 15.38 0.07 88.89 SNHG26-250 lncRNA A375 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 16.00 30.77 0.13 55.17 SNHG26-250 lncRNA A375 (Cell line)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 23.00 12.30 0.19 100.0 LINC02422-207 lncRNA A375 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 23.00 3.66 0.19 100.0 ENST00000753088 lncRNA A375 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_542_+ 508–542 13.00 2.07 0.11 100.0 ENST00000753088 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_127_+ 98–127 52.77 4.67 0.43 62.08 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_133_172_+ 133–172 75.00 6.64 0.61 100.0 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_117_172_+ 117–172 41.00 3.63 0.33 100.0 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_137_172_+ 137–172 32.00 2.83 0.26 100.0 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_132_+ 98–132 51.79 4.59 0.42 24.43 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_130_+ 98–130 180.16 15.96 1.47 80.43 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_107_172_+ 107–172 25.94 2.30 0.21 27.6 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_125_+ 98–125 20.57 1.82 0.17 32.66 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_172_+ 98–172 31.00 2.75 0.25 100.0 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_109_172_+ 109–172 123.55 10.94 1.01 85.8 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756452.1 ENST00000756452.1_116_129_+ 116–129 536.00 96.58 4.37 100.0 ENST00000756452 lncRNA A375 (Cell line)
ENST00000760093.1 ENST00000760093.1_80_108_+ 80–108 13.00 8.12 0.11 100.0 ENST00000760093 lncRNA A375 (Cell line)
ENST00000760397.1 ENST00000760397.1_331_421_+ 331–421 37468.00 96.78 305.81 97.72 SNHG14-356 lncRNA A375 (Cell line)