ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 3801.00 30.76 12.53 62.72 ENST00000655317 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 749.00 6.06 2.47 100.0 ENST00000655317 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 204.00 0.30 0.67 36.89 LINC01962-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 65298.00 95.02 215.25 100.0 LINC01962-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 216.00 0.31 0.71 100.0 LINC01962-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 1285.00 58.84 4.24 88.56 SNHG14-241 lncRNA esophagus squamous epithelium (Tissue)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 650.00 97.31 2.14 100.0 MEG8-228 lncRNA esophagus squamous epithelium (Tissue)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 39.00 11.37 0.13 100.0 SNHG14-254 lncRNA esophagus squamous epithelium (Tissue)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 102.00 14.11 0.34 100.0 SNHG14-261 lncRNA esophagus squamous epithelium (Tissue)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 304.00 42.05 1.00 80.0 SNHG14-261 lncRNA esophagus squamous epithelium (Tissue)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 481.00 3.58 1.59 100.0 LIMD1-AS1-204 lncRNA esophagus squamous epithelium (Tissue)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 7095.00 52.83 23.39 100.0 LIMD1-AS1-204 lncRNA esophagus squamous epithelium (Tissue)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 2099.00 15.63 6.92 94.21 LIMD1-AS1-204 lncRNA esophagus squamous epithelium (Tissue)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 3484.00 57.82 11.48 81.44 MIR99AHG-262 lncRNA esophagus squamous epithelium (Tissue)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 1032.00 17.13 3.40 100.0 MIR99AHG-262 lncRNA esophagus squamous epithelium (Tissue)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 17.00 70.83 0.06 100.0 SNHG14-270 lncRNA esophagus squamous epithelium (Tissue)
ENST00000661541.1 ENST00000661541.1_446_534_+ 446–534 4.00 0.25 0.01 100.0 SNHG14-275 lncRNA esophagus squamous epithelium (Tissue)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 23.00 71.88 0.08 88.46 MIR9-2HG-225 lncRNA esophagus squamous epithelium (Tissue)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 51.00 34.46 0.17 100.0 MEG8-233 lncRNA esophagus squamous epithelium (Tissue)
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 50.00 33.78 0.16 100.0 MEG8-233 lncRNA esophagus squamous epithelium (Tissue)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 34.00 15.04 0.11 100.0 SNHG14-278 lncRNA esophagus squamous epithelium (Tissue)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 6.00 2.65 0.02 66.67 SNHG14-278 lncRNA esophagus squamous epithelium (Tissue)
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 33.00 30.56 0.11 100.0 MEG8-234 lncRNA esophagus squamous epithelium (Tissue)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 5.00 4.63 0.02 100.0 MEG8-234 lncRNA esophagus squamous epithelium (Tissue)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 3259.00 92.22 10.74 100.0 SNHG17-252 lncRNA esophagus squamous epithelium (Tissue)