ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 306.00 1.44 1.01 100.0 RPL4-207 retained intron esophagus squamous epithelium (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 76200.00 93.83 251.19 98.42 ENST00000565336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 1652.00 2.03 5.45 56.02 ENST00000565336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1147.00 1.25 3.78 100.0 RBMX-210 retained intron esophagus squamous epithelium (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 140.00 0.15 0.46 100.0 RBMX-210 retained intron esophagus squamous epithelium (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 997.00 1.08 3.29 100.0 RBMX-210 retained intron esophagus squamous epithelium (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 66768.00 72.66 220.10 75.66 RBMX-210 retained intron esophagus squamous epithelium (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 3726.00 44.66 12.28 100.0 RPL4-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 3040.00 36.44 10.02 100.0 RPL4-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 2486.50 23.36 8.20 45.37 POLG-DT-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 4642.67 43.63 15.30 81.58 POLG-DT-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 130.00 1.22 0.43 100.0 POLG-DT-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 2.00 0.08 0.01 100.0 ENST00000570843 lncRNA esophagus squamous epithelium (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 534.00 21.42 1.76 100.0 ENST00000570843 lncRNA esophagus squamous epithelium (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 1022.00 85.02 3.37 100.0 MIR497HG-207 lncRNA esophagus squamous epithelium (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 30541.00 98.78 100.68 99.49 MIR22HG-212 lncRNA esophagus squamous epithelium (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 700.00 0.96 2.31 70.14 SNORD53B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 64323.00 88.27 212.04 90.9 SNORD53B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 298.00 0.41 0.98 29.86 SNORD53B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 164.00 65.08 0.54 100.0 ENST00000578036 lncRNA esophagus squamous epithelium (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 3323.00 94.00 10.95 100.0 RPL23A-207 protein coding esophagus squamous epithelium (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 525.00 92.59 1.73 100.0 MIR744-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 194.00 80.17 0.64 100.0 MIR378C-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 2.00 0.04 0.01 100.0 MIR142HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 170.00 3.82 0.56 11.27 MIR142HG-201 lncRNA esophagus squamous epithelium (Tissue)