ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 156.00 1.13 0.51 100.0 WDR74-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 2234.00 83.70 7.36 100.0 HSPA8-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 144.00 13.32 0.47 100.0 SCARNA9-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 100419.00 97.56 331.03 100.0 TAF1D-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 316.00 0.31 1.04 100.0 TAF1D-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 4.00 0.03 0.01 100.0 HSPA8-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 12429.00 92.44 40.97 100.0 HSPA8-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 25.00 0.19 0.08 100.0 HSPA8-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 664.00 31.85 2.19 100.0 RPS2-215 retained intron esophagus squamous epithelium (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 134645.00 79.81 443.85 80.85 ENST00000548801 lncRNA esophagus squamous epithelium (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 635.00 12.19 2.09 100.0 ENST00000554988 lncRNA esophagus squamous epithelium (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 1802.00 34.59 5.94 100.0 ENST00000554988 lncRNA esophagus squamous epithelium (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 365.00 7.01 1.20 100.0 ENST00000554988 lncRNA esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 68.00 0.81 0.22 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 6388.00 76.41 21.06 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 1514.00 18.11 4.99 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 92.00 1.10 0.30 100.0 SNHG14-220 retained intron esophagus squamous epithelium (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 487.00 98.58 1.61 100.0 TEKT4P2-201 transcribed unprocessed pseudogene esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 618.00 0.83 2.04 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 149.00 0.20 0.49 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 2.00 0.00 0.01 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 717.00 0.96 2.36 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 69574.00 93.39 229.35 97.46 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 72.00 0.35 0.24 100.0 ENST00000563103 lncRNA esophagus squamous epithelium (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 18639.00 87.42 61.44 100.0 RPL4-207 retained intron esophagus squamous epithelium (Tissue)