ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 3238.00 72.72 10.67 80.97 MIR142HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 2.00 0.03 0.01 100.0 SNORD3C-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 485.52 0.18 1.60 54.92 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 363.41 0.14 1.20 51.99 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 166670.00 62.70 549.42 77.75 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 96702.00 36.38 318.78 92.19 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 14.00 4.07 0.05 100.0 MIR133A1HG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 519.00 0.53 1.71 100.0 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 1822.00 1.87 6.01 52.75 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 4216.00 4.32 13.90 29.73 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 73708.00 75.47 242.98 98.41 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 15055.00 15.42 49.63 97.31 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 35.00 20.59 0.12 26.12 ENST00000582320 lncRNA esophagus squamous epithelium (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 9.00 5.29 0.03 100.0 ENST00000582320 lncRNA esophagus squamous epithelium (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 3.00 1.76 0.01 100.0 ENST00000582320 lncRNA esophagus squamous epithelium (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 4632.00 13.12 15.27 100.0 RPL17-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 15681.75 44.42 51.69 55.8 RPL17-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 13594.28 38.51 44.81 46.43 RPL17-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 5.00 0.00 0.02 100.0 SNORD43-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 983415.00 99.55 3241.80 99.86 SNORD43-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 27.00 0.00 0.09 100.0 SNORD43-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 67.00 45.58 0.22 100.0 MIR151B-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 38.00 0.49 0.13 100.0 SNORD3A-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 3606.00 83.15 11.89 100.0 SNORD92-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 1957.00 32.10 6.45 100.0 NSRP1-214 protein coding esophagus squamous epithelium (Tissue)