ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 1749.00 0.25 5.77 71.59 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1577.00 0.23 5.20 49.31 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 180756.00 26.24 595.86 81.9 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 53942.00 98.59 177.82 100.0 RPS8-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 348.00 26.85 1.15 100.0 RPL7A-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 190.00 14.66 0.63 100.0 RPL7A-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 343.00 26.47 1.13 100.0 RPL7A-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 5597.00 0.84 18.45 100.0 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 753.00 0.11 2.48 100.0 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 233325.00 35.04 769.15 99.26 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 421256.00 63.26 1388.66 96.11 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 6.00 0.00 0.02 100.0 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 1209.00 46.30 3.99 100.0 GABRE-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 1047.00 0.58 3.45 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 19473.00 10.73 64.19 91.75 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 171.00 0.09 0.56 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 352.00 0.19 1.16 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 125.00 0.07 0.41 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 406.00 0.22 1.34 65.38 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 153102.00 84.36 504.70 99.64 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 8.00 0.00 0.03 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 10548.00 68.69 34.77 82.12 RPL7A-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 265.00 1.73 0.87 100.0 RPL7A-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 287.00 1.87 0.95 100.0 RPL7A-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 587.00 8.12 1.94 23.22 RN7SL2-201 misc RNA esophagus squamous epithelium (Tissue)