ENCFF450POH

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 33.00 1.55 0.26 100.0 NOP56-217 protein coding CDS not defined GM23338 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 1763.00 82.61 13.63 99.55 NOP56-217 protein coding CDS not defined GM23338 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 16647.00 58.81 128.72 99.5 RABGGTB-213 protein coding CDS not defined GM23338 (Cell line)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 5848.00 20.66 45.22 100.0 RABGGTB-213 protein coding CDS not defined GM23338 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 138.00 0.49 1.07 88.46 RABGGTB-213 protein coding CDS not defined GM23338 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 8.00 0.03 0.06 28.57 RABGGTB-213 protein coding CDS not defined GM23338 (Cell line)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 380.00 1.34 2.94 100.0 RABGGTB-213 protein coding CDS not defined GM23338 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 19.00 0.07 0.15 100.0 RABGGTB-213 protein coding CDS not defined GM23338 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 20.00 0.07 0.15 71.43 RABGGTB-213 protein coding CDS not defined GM23338 (Cell line)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 307.00 14.77 2.37 100.0 GNL3-211 retained intron GM23338 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 1429.00 68.73 11.05 100.0 GNL3-211 retained intron GM23338 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 81.00 11.65 0.63 100.0 RPL5-205 retained intron GM23338 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 315.00 45.32 2.44 100.0 RPL5-205 retained intron GM23338 (Cell line)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 5594.00 12.54 43.25 100.0 ZBED9-AS1-201 lncRNA GM23338 (Cell line)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 560.00 48.70 4.33 100.0 RPS3A-206 retained intron GM23338 (Cell line)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 4682.00 88.79 36.20 100.0 COX7C-203 protein coding GM23338 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 7186.61 65.63 55.57 71.95 RACK1-229 protein coding GM23338 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 2698.40 24.64 20.87 26.62 RACK1-229 protein coding GM23338 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 48.00 0.44 0.37 48.98 RACK1-229 protein coding GM23338 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 42571.00 85.13 329.18 91.85 RACK1-230 retained intron GM23338 (Cell line)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 5240.00 10.48 40.52 49.9 RACK1-230 retained intron GM23338 (Cell line)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 1.00 0.06 0.01 100.0 RNA5SP486-201 rRNA pseudogene GM23338 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 419.00 84.82 3.24 100.0 SCARNA5-201 scaRNA GM23338 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 93.00 0.25 0.72 100.0 RNY4-201 misc RNA GM23338 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 370.00 1.01 2.86 63.14 RNY4-201 misc RNA GM23338 (Cell line)