ENCFF450POH

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 226.00 0.14 1.75 100.0 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 4.00 0.00 0.03 100.0 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 2418.00 89.49 18.70 100.0 RPS8-207 protein coding CDS not defined GM23338 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 31.00 2.52 0.24 100.0 RPL7A-206 protein coding CDS not defined GM23338 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 587.00 47.72 4.54 100.0 RPL7A-206 protein coding CDS not defined GM23338 (Cell line)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 118.00 9.59 0.91 100.0 RPL7A-206 protein coding CDS not defined GM23338 (Cell line)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 2.00 0.00 0.02 100.0 RPL21-209 retained intron GM23338 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 1247.00 1.82 9.64 100.0 RPL21-209 retained intron GM23338 (Cell line)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 100.00 0.15 0.77 100.0 RPL21-209 retained intron GM23338 (Cell line)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 31543.00 45.94 243.90 99.45 RPL21-209 retained intron GM23338 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 33875.00 49.34 261.93 95.19 RPL21-209 retained intron GM23338 (Cell line)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 63.00 31.98 0.49 100.0 GABRE-209 retained intron GM23338 (Cell line)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 2.00 0.01 0.02 100.0 RPL13A-212 retained intron GM23338 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 18.00 0.05 0.14 100.0 RPL13A-212 retained intron GM23338 (Cell line)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 88.00 0.24 0.68 100.0 RPL13A-212 retained intron GM23338 (Cell line)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 9.00 0.02 0.07 60.0 RPL13A-212 retained intron GM23338 (Cell line)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 1733.00 4.80 13.40 91.84 RPL13A-212 retained intron GM23338 (Cell line)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 31310.00 86.71 242.10 99.79 RPL13A-212 retained intron GM23338 (Cell line)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 103.00 0.29 0.80 100.0 RPL13A-212 retained intron GM23338 (Cell line)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 1069.00 47.64 8.27 84.84 RPL7A-207 protein coding CDS not defined GM23338 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 363.00 16.18 2.81 100.0 RPL7A-207 protein coding CDS not defined GM23338 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 33.00 1.47 0.26 100.0 RPL7A-207 protein coding CDS not defined GM23338 (Cell line)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 71.00 0.06 0.55 100.0 RN7SL2-201 misc RNA GM23338 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 93689.00 80.77 724.44 99.49 RN7SL2-201 misc RNA GM23338 (Cell line)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 1.00 6.25 0.01 100.0 RGS11-208 retained intron GM23338 (Cell line)