ENCFF450POH

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 2065.00 76.94 15.97 89.09 SNORD124-201 snoRNA GM23338 (Cell line)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 6.00 1.08 0.05 100.0 SNHG12-201 retained intron GM23338 (Cell line)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 8.00 1.38 0.06 100.0 RPL3-212 retained intron GM23338 (Cell line)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 54.00 9.33 0.42 100.0 RPL3-212 retained intron GM23338 (Cell line)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 3144.00 95.85 24.31 100.0 SMC1A-204 retained intron GM23338 (Cell line)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 4434.00 71.89 34.29 99.55 RABGGTB-208 protein coding CDS not defined GM23338 (Cell line)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 7.00 3.72 0.05 100.0 DDX39B-219 retained intron GM23338 (Cell line)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 8.00 4.26 0.06 100.0 DDX39B-219 retained intron GM23338 (Cell line)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 1.00 0.53 0.01 100.0 DDX39B-219 retained intron GM23338 (Cell line)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 226.00 37.48 1.75 100.0 RPS8-206 protein coding CDS not defined GM23338 (Cell line)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 72.00 0.31 0.56 100.0 RPL13-207 retained intron GM23338 (Cell line)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 22037.00 94.32 170.40 99.97 RPL13-207 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 1582.00 1.00 12.23 83.0 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 72162.00 45.39 557.98 90.47 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 187.00 0.12 1.45 100.0 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 57562.00 36.21 445.09 96.23 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 683.00 0.43 5.28 100.0 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1051.00 0.66 8.13 43.88 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 226.00 0.14 1.75 100.0 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 4.00 0.00 0.03 100.0 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 3993.00 2.51 30.88 68.19 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 216.00 0.14 1.67 48.87 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 1241.00 0.78 9.60 87.09 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 636.00 0.40 4.92 47.96 EIF4A2-219 retained intron GM23338 (Cell line)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 857.00 0.54 6.63 59.39 EIF4A2-219 retained intron GM23338 (Cell line)