ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 78532.00 74.66 390.48 87.47 RNA5SP358-201 rRNA pseudogene esophagus squamous epithelium (Tissue)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 216.00 1.74 1.07 50.94 RNA5SP145-201 rRNA pseudogene esophagus squamous epithelium (Tissue)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 3.00 100.00 0.01 100.0 Y_RNA.105-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 7.00 1.79 0.03 100.0 RNY4P9-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 1.00 0.02 0.00 100.0 RNU5B-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 945.00 22.72 4.70 100.0 RNU5B-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 395.00 9.50 1.96 100.0 RNU5B-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 15.00 0.36 0.07 100.0 RNU5B-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000363293.1 ENST00000363293.1_2_82_+ 2–82 1063.00 85.31 5.29 97.17 SNORD115-18-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 15.00 1.08 0.07 93.75 RNY4P27-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 2.00 0.14 0.01 66.67 RNY4P27-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 81.00 4.21 0.40 100.0 Y_RNA.136-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000363608.1 ENST00000363608.1_2_82_+ 2–82 44.00 73.33 0.22 100.0 SNORD115-41-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 1397.00 93.70 6.95 97.28 SNORD114-25-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 1894.00 98.03 9.42 100.0 SNORD113-7-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 36.00 12.95 0.18 100.0 Y_RNA.181-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000363887.1 ENST00000363887.1_2_82_+ 2–82 8.00 33.33 0.04 100.0 SNORD115-16-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000364117.1 ENST00000364117.1_2_82_+ 2–82 1.00 25.00 0.00 100.0 SNORD115-30-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 631.53 23.30 3.14 74.39 RNY1-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 188.01 6.93 0.93 28.49 RNY1-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 81.00 2.99 0.40 100.0 RNY1-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 45.00 1.66 0.22 100.0 RNY1-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 1630.00 1.14 8.10 100.0 RNA5SP202-201 rRNA pseudogene esophagus squamous epithelium (Tissue)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 3546.00 2.48 17.63 100.0 RNA5SP202-201 rRNA pseudogene esophagus squamous epithelium (Tissue)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 7237.24 5.07 35.99 43.24 RNA5SP202-201 rRNA pseudogene esophagus squamous epithelium (Tissue)