ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 20.00 1.65 0.10 100.0 RNU5E-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 73.00 0.59 0.36 22.05 RNA5SP370-201 rRNA pseudogene esophagus squamous epithelium (Tissue)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 79.00 7.86 0.39 100.0 SNORA31-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 1551.00 12.49 7.71 100.0 RNA5SP389-201 rRNA pseudogene esophagus squamous epithelium (Tissue)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 100.00 0.81 0.50 100.0 RNA5SP389-201 rRNA pseudogene esophagus squamous epithelium (Tissue)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 159.00 1.28 0.79 32.06 RNA5SP389-201 rRNA pseudogene esophagus squamous epithelium (Tissue)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 154.00 1.24 0.77 57.04 RNA5SP389-201 rRNA pseudogene esophagus squamous epithelium (Tissue)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 2082.00 5.83 10.35 72.62 RNU5A-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 5057.00 14.17 25.14 80.76 RNU5A-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 306.66 0.86 1.52 54.47 RNU5A-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 4639.00 13.00 23.07 81.87 RNU5A-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 1468.00 4.11 7.30 69.9 RNU5A-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 374.00 1.05 1.86 100.0 RNU5A-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 5652.00 15.84 28.10 87.21 RNU5A-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 1321.00 3.70 6.57 45.24 RNU5A-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 896.93 2.51 4.46 61.1 RNU5A-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 1410.00 3.95 7.01 63.46 RNU5A-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 307.60 0.86 1.53 60.43 RNU5A-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 156.00 0.44 0.78 100.0 RNU5A-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 824.50 2.31 4.10 41.37 RNU5A-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 1566.00 4.39 7.79 25.8 RNU5A-1-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 29.00 61.70 0.14 100.0 SNORD114-14-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 385.00 3.19 1.91 100.0 SNORD104-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 55.00 0.46 0.27 100.0 SNORD104-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 62.00 50.82 0.31 68.89 SNORD115-9-201 snoRNA esophagus squamous epithelium (Tissue)