ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 3628.00 34.77 18.04 93.41 ENST00000771298 lncRNA esophagus squamous epithelium (Tissue)
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 669.00 6.41 3.33 100.0 ENST00000771298 lncRNA esophagus squamous epithelium (Tissue)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 746.00 53.13 3.71 100.0 ENST00000772672 lncRNA esophagus squamous epithelium (Tissue)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 21.00 1.50 0.10 100.0 ENST00000772672 lncRNA esophagus squamous epithelium (Tissue)
ENST00000772672.1 ENST00000772672.1_91_113_+ 91–113 53.00 3.77 0.26 100.0 ENST00000772672 lncRNA esophagus squamous epithelium (Tissue)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 442.00 31.73 2.20 100.0 ENST00000773843 lncRNA esophagus squamous epithelium (Tissue)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 120.00 0.01 0.60 100.0 SNHG12-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 854005.00 56.90 4246.30 91.77 SNHG12-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 642212.00 42.79 3193.22 97.24 SNHG12-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 10083.00 0.70 50.13 100.0 SNHG25-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 1245004.00 86.72 6190.43 88.12 SNHG25-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 263.00 0.02 1.31 100.0 SNHG25-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 220.67 0.02 1.10 44.76 SNHG25-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 341.42 0.02 1.70 53.02 SNHG25-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 318.46 0.02 1.58 33.63 SNHG25-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 3478.00 0.24 17.29 90.03 SNHG25-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 229.00 0.02 1.14 100.0 SNHG25-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000778783.1 ENST00000778783.1_84_171_+ 84–171 37.00 12.80 0.18 100.0 ENST00000778783 lncRNA esophagus squamous epithelium (Tissue)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 2359.00 86.54 11.73 90.56 MIR155HG-205 lncRNA esophagus squamous epithelium (Tissue)
ENST00000785178.1 ENST00000785178.1_899_938_+ 899–938 14.00 0.22 0.07 100.0 ENST00000785178 lncRNA esophagus squamous epithelium (Tissue)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 2000.00 6.15 9.94 93.24 ENST00000786284 lncRNA esophagus squamous epithelium (Tissue)
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 13177.00 40.50 65.52 100.0 ENST00000786284 lncRNA esophagus squamous epithelium (Tissue)
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 145.00 0.45 0.72 10.27 ENST00000786284 lncRNA esophagus squamous epithelium (Tissue)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 50.00 2.24 0.25 98.04 ENST00000788343 lncRNA esophagus squamous epithelium (Tissue)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 3996.96 43.02 19.87 52.61 ENST00000797550 lncRNA esophagus squamous epithelium (Tissue)