ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 106.00 0.64 0.53 100.0 MIR222HG-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 42.00 16.67 0.21 100.0 RPSA-216 retained intron esophagus squamous epithelium (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 682.00 4.37 3.39 79.12 MIR99AHG-370 lncRNA esophagus squamous epithelium (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 14030.00 89.83 69.76 98.04 MIR99AHG-370 lncRNA esophagus squamous epithelium (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 852.00 97.48 4.24 100.0 HPS4-237 retained intron esophagus squamous epithelium (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 17.00 54.84 0.08 100.0 MEG8-253 lncRNA esophagus squamous epithelium (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 1.00 2.38 0.00 100.0 MEG9-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 23.00 54.76 0.11 100.0 MEG9-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 974.00 11.86 4.84 100.0 DNAJC5-203 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 1066.00 10.99 5.30 100.0 ENST00000707189 TEC esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 10.00 0.01 0.05 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 420.00 0.62 2.09 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 25470.80 37.83 126.65 41.83 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 54.00 0.08 0.27 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 38081.51 56.56 189.35 60.54 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 364.00 0.54 1.81 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 508.00 0.75 2.53 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 110.00 0.16 0.55 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 198.00 0.29 0.98 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 7815.00 4.70 38.86 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 208.00 0.12 1.03 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 31.00 0.02 0.15 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 2679.00 1.61 13.32 81.78 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 153977.00 92.53 765.61 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 57646.00 95.30 286.63 98.86 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)