ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 2.00 0.00 0.01 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 6900.00 1.06 34.31 95.17 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 30.00 4.99 0.15 100.0 SNHG14-323 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 144.00 0.49 0.72 65.75 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 28487.00 96.37 141.64 98.52 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 85.00 0.29 0.42 37.95 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 94.00 0.32 0.47 90.38 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 4.00 0.01 0.02 100.0 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 738.00 71.93 3.67 96.85 SNHG14-336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 223.00 21.73 1.11 40.11 SNHG14-336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 347.00 57.55 1.73 92.53 SNHG14-341 lncRNA esophagus squamous epithelium (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 234.00 13.38 1.16 100.0 NCL-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 396.00 40.45 1.97 100.0 FMN2-209 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 254.00 3.44 1.26 28.96 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 31.00 0.42 0.15 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 244.00 3.31 1.21 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 970.00 13.15 4.82 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 8.00 0.11 0.04 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 623.00 8.45 3.10 71.04 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 174.00 26.20 0.87 100.0 SNHG10-212 lncRNA esophagus squamous epithelium (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 11208.67 20.24 55.73 31.84 SNHG19-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 43036.36 77.71 213.99 80.03 SNHG19-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 3.73 0.01 0.02 93.24 SNHG19-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 12887.00 77.26 64.08 100.0 MIR222HG-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 2013.00 12.07 10.01 80.49 MIR222HG-206 lncRNA esophagus squamous epithelium (Tissue)