ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 451.00 0.29 2.24 100.0 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 1.55 0.00 0.01 77.63 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 786.00 2.71 3.91 100.0 U2.6-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 61.00 0.53 0.30 29.47 ENST00000619323 lncRNA esophagus squamous epithelium (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 10793.00 93.26 53.67 98.16 ENST00000619323 lncRNA esophagus squamous epithelium (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 595.00 28.91 2.96 100.0 SCARNA4-202 scaRNA esophagus squamous epithelium (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 972.00 19.12 4.83 100.0 ENST00000625572 miRNA esophagus squamous epithelium (Tissue)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 2652.00 88.78 13.19 100.0 ENST00000628177 snoRNA esophagus squamous epithelium (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 35924.00 95.84 178.62 100.0 ENST00000630615 snoRNA esophagus squamous epithelium (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 474.00 36.49 2.36 100.0 DMRT2-209 protein coding esophagus squamous epithelium (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 425.00 32.72 2.11 100.0 DMRT2-209 protein coding esophagus squamous epithelium (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 290.00 15.32 1.44 100.0 SNORD98-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 1094.00 57.79 5.44 100.0 SNORD98-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 35622.95 57.57 177.13 60.39 MIR106AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 6.92 0.01 0.03 43.27 MIR106AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 6.82 0.01 0.03 42.6 MIR106AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 126.00 16.13 0.63 100.0 MEG8-222 lncRNA esophagus squamous epithelium (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 65.00 8.32 0.32 100.0 MEG8-222 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 2703.00 52.48 13.44 98.18 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 745.00 14.46 3.70 90.19 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 175.00 3.40 0.87 100.0 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 149.00 2.89 0.74 95.51 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 32.00 0.62 0.16 100.0 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 135.00 2.62 0.67 38.68 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 295.00 5.73 1.47 86.51 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)