ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 2309.00 70.76 11.48 100.0 SNORD91B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 12724.00 54.72 63.27 61.17 SNORD91A-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 4959.00 45.50 24.66 95.04 MIR486-1-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 3367.00 16.56 16.74 48.3 NOP56-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 408.00 2.01 2.03 100.0 NOP56-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 804.00 3.95 4.00 100.0 NOP56-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 8579.00 42.19 42.66 83.78 NOP56-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 107.00 1.77 0.53 45.92 RNA5-8SN2-201 rRNA esophagus squamous epithelium (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 1035.93 17.18 5.15 47.74 RNA5-8SN2-201 rRNA esophagus squamous epithelium (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 20.00 0.33 0.10 100.0 RNA5-8SN2-201 rRNA esophagus squamous epithelium (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 545.00 9.04 2.71 100.0 RNA5-8SN2-201 rRNA esophagus squamous epithelium (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 66.00 1.09 0.33 100.0 RNA5-8SN2-201 rRNA esophagus squamous epithelium (Tissue)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 200.00 3.32 0.99 65.15 RNA5-8SN2-201 rRNA esophagus squamous epithelium (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 1105.43 18.33 5.50 50.94 RNA5-8SN2-201 rRNA esophagus squamous epithelium (Tissue)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 28.00 87.50 0.14 100.0 MIR7974-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 851.00 0.55 4.23 100.0 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 1311.45 0.85 6.52 36.2 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 480.00 0.31 2.39 100.0 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 2.00 0.00 0.01 100.0 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 25.00 0.02 0.12 89.29 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 19.00 0.01 0.09 21.84 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 8.00 0.01 0.04 100.0 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 2443.89 1.58 12.15 67.45 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 115463.00 74.45 574.11 100.0 U2.3-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 312.00 0.20 1.55 100.0 U2.3-201 snRNA esophagus squamous epithelium (Tissue)