ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 14188.00 19.10 69.99 65.7 RNU5A-1-201 snRNA spleen (Tissue)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 48.00 0.06 0.24 100.0 RNU5A-1-201 snRNA spleen (Tissue)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 1414.87 1.90 6.98 49.03 RNU5A-1-201 snRNA spleen (Tissue)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 9091.00 12.24 44.85 72.1 RNU5A-1-201 snRNA spleen (Tissue)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 8652.00 11.65 42.68 65.54 RNU5A-1-201 snRNA spleen (Tissue)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 11215.00 15.10 55.33 69.06 RNU5A-1-201 snRNA spleen (Tissue)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 492.00 88.33 2.43 100.0 SNORD114-14-201 snoRNA spleen (Tissue)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 1530.00 2.99 7.55 100.0 SNORD104-201 snoRNA spleen (Tissue)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 62.00 0.12 0.31 100.0 SNORD104-201 snoRNA spleen (Tissue)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 75057.00 67.00 370.28 77.88 RNA5SP358-201 rRNA pseudogene spleen (Tissue)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 13.00 0.69 0.06 56.52 RNA5SP145-201 rRNA pseudogene spleen (Tissue)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 2.00 8.33 0.01 100.0 Y_RNA.105-201 misc RNA spleen (Tissue)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 25.00 4.46 0.12 100.0 RNY4P9-201 misc RNA spleen (Tissue)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 5204.00 34.40 25.67 100.0 RNU5B-1-201 snRNA spleen (Tissue)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 1886.00 12.47 9.30 100.0 RNU5B-1-201 snRNA spleen (Tissue)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 97.00 0.64 0.48 100.0 RNU5B-1-201 snRNA spleen (Tissue)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 139.00 8.13 0.69 99.29 RNY4P27-201 misc RNA spleen (Tissue)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 1.00 0.06 0.00 50.0 RNY4P27-201 misc RNA spleen (Tissue)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 340.00 16.13 1.68 100.0 Y_RNA.136-201 misc RNA spleen (Tissue)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 3660.00 92.26 18.06 98.6 SNORD114-25-201 snoRNA spleen (Tissue)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 1204.00 90.19 5.94 100.0 SNORD113-7-201 snoRNA spleen (Tissue)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 102.00 40.32 0.50 100.0 Y_RNA.181-201 misc RNA spleen (Tissue)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 464.95 8.97 2.29 36.81 RNY1-201 misc RNA spleen (Tissue)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 12.00 0.23 0.06 100.0 RNY1-201 misc RNA spleen (Tissue)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 1693.44 32.69 8.35 73.34 RNY1-201 misc RNA spleen (Tissue)