ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 49.00 0.47 0.24 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 800.00 7.63 3.95 91.12 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_29_+ 1–29 36.00 0.34 0.18 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 2570.00 14.68 12.68 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 6052.00 34.58 29.86 54.35 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 848.00 5.41 4.18 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 169.00 1.36 0.83 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 82.00 0.66 0.40 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 10568.00 84.94 52.14 97.42 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 51.00 0.41 0.25 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 14.00 0.11 0.07 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 552.00 3.70 2.72 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 3956.00 46.81 19.52 86.47 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 118.00 0.86 0.58 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 700.00 37.88 3.45 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 19.00 1.03 0.09 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 373.00 20.18 1.84 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_33_71_+ 33–71 53.00 2.87 0.26 37.06 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 227.00 0.02 1.12 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 3408.00 76.90 16.81 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_34_+ 1–34 5.00 0.81 0.02 62.5 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_32_+ 1–32 3.00 0.49 0.01 37.5 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 1515.00 16.78 7.47 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 31.00 0.34 0.15 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 1653.00 83.53 8.15 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA spleen (Tissue)