ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 388.00 67.24 1.91 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 307.00 35.95 1.51 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 1404.00 1.77 6.93 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 120.00 0.15 0.59 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 272.00 0.34 1.34 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 619.00 0.78 3.05 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 229.00 0.29 1.13 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 129.00 0.16 0.64 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 646.00 0.05 3.19 72.42 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 708.00 0.06 3.49 59.3 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 8670.00 0.71 42.77 96.49 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 5572.00 42.25 27.49 89.14 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 1907.00 96.17 9.41 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 215.00 21.74 1.06 88.84 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 113.00 91.13 0.56 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 38.00 0.06 0.19 11.11 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 304.00 0.49 1.50 88.89 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 55549.00 88.99 274.04 99.05 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 2010.05 23.12 9.92 53.52 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 2913.00 33.50 14.37 97.13 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 2259.64 25.99 11.15 52.7 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 142973.00 97.69 705.33 99.72 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 441.00 10.05 2.18 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 5083.00 29.10 25.08 60.06 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA spleen (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 82.00 0.01 0.40 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA spleen (Tissue)