ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 996.00 0.09 4.91 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 45014.00 3.99 222.07 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 275.00 0.02 1.36 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 126041.00 11.18 621.80 89.94 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 4.00 0.00 0.02 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 1210.00 0.11 5.97 85.51 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 66.00 0.01 0.33 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 32.00 0.00 0.16 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 8817.00 0.78 43.50 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1900.00 0.17 9.37 84.59 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 649.60 0.06 3.20 37.27 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 1582.00 0.14 7.80 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 1921.00 0.17 9.48 67.36 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 2727.00 0.24 13.45 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 219.00 0.02 1.08 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 564.00 2.01 2.78 100.0 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 6001.00 21.38 29.60 100.0 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 279.01 0.99 1.38 90.59 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 146.00 0.52 0.72 100.0 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 209.00 0.74 1.03 100.0 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 22.64 0.08 0.11 7.35 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 9007.00 32.09 44.43 99.97 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 56.00 0.20 0.28 100.0 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 3293.00 11.73 16.25 100.0 SNHG5-273 lncRNA spleen (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 3.00 0.00 0.01 100.0 MEG8-251 lncRNA spleen (Tissue)