ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 11.25 0.01 0.06 19.07 MIR106AHG-201 lncRNA spleen (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 1.00 0.00 0.00 100.0 MIR106AHG-201 lncRNA spleen (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 42.60 0.03 0.21 72.2 MIR106AHG-201 lncRNA spleen (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 114.00 20.88 0.56 100.0 MEG8-222 lncRNA spleen (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 225.00 41.21 1.11 100.0 MEG8-222 lncRNA spleen (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 95.00 5.42 0.47 100.0 SNHG14-224 lncRNA spleen (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 226.00 12.90 1.11 75.59 SNHG14-224 lncRNA spleen (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 148.00 8.45 0.73 64.91 SNHG14-224 lncRNA spleen (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 5205.33 6.86 25.68 45.96 5S_rRNA.20-201 rRNA pseudogene spleen (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 396.00 5.96 1.95 100.0 HSPA9-211 retained intron spleen (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 2568.00 38.67 12.67 57.9 HSPA9-211 retained intron spleen (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 5227.00 67.33 25.79 100.0 DNM3OS-205 lncRNA spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 1845.00 0.30 9.10 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 816.00 0.13 4.03 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 7163.00 1.15 35.34 95.15 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 50.00 0.01 0.25 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 236.00 0.04 1.16 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 395.00 0.06 1.95 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 427980.00 68.85 2111.36 99.87 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 914.00 0.15 4.51 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 12202.00 1.96 60.20 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 1284.00 0.21 6.33 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 647.00 0.10 3.19 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 6319.00 1.02 31.17 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 11.00 0.00 0.05 100.0 GAS5-230 retained intron spleen (Tissue)