ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 59.00 29.21 0.29 100.0 MIR151B-201 miRNA spleen (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 76.00 1.21 0.37 100.0 SNORD3A-201 snoRNA spleen (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 2615.00 28.81 12.90 100.0 NSRP1-214 protein coding spleen (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 3744.00 41.24 18.47 67.21 NSRP1-214 protein coding spleen (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1644.00 31.87 8.11 93.36 MIR23AHG-201 lncRNA spleen (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 896.00 17.37 4.42 86.32 MIR23AHG-201 lncRNA spleen (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 808.00 15.66 3.99 87.73 MIR23AHG-201 lncRNA spleen (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 373.00 7.23 1.84 65.32 MIR23AHG-201 lncRNA spleen (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 10.00 6.33 0.05 100.0 ODAD3-204 nonsense mediated decay spleen (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1104.00 2.80 5.45 100.0 VMP1-217 retained intron spleen (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 185.00 0.47 0.91 100.0 VMP1-217 retained intron spleen (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 26903.00 68.33 132.72 76.2 VMP1-217 retained intron spleen (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1537.00 28.17 7.58 100.0 C19orf48P-203 retained intron spleen (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 116.00 2.13 0.57 100.0 C19orf48P-203 retained intron spleen (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 476885.00 80.05 2352.63 81.64 CARMN-209 lncRNA spleen (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 1406.00 57.02 6.94 100.0 PPFIA1P1-201 processed pseudogene spleen (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 322.00 33.40 1.59 100.0 SNORD114-21-201 snoRNA spleen (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 377.00 39.11 1.86 100.0 SNORD114-21-201 snoRNA spleen (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 3747.00 94.26 18.49 100.0 MIR98-201 miRNA spleen (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 32.00 40.51 0.16 100.0 SNORD113-5-201 snoRNA spleen (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 672.00 96.97 3.32 100.0 MIR15A-201 miRNA spleen (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 3.00 42.86 0.01 100.0 MIR376C-201 miRNA spleen (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 508.00 49.08 2.51 100.0 SNHG21-206 retained intron spleen (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 983214.00 48.55 4850.51 97.75 MIR486-1-201 miRNA spleen (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 31173.00 76.33 153.79 99.96 NOP56-219 retained intron spleen (Tissue)