ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 277.00 23.80 1.37 28.79 SNORD53B-201 snoRNA spleen (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 55.00 42.64 0.27 100.0 ENST00000578036 lncRNA spleen (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 887.00 82.13 4.38 100.0 RPL23A-207 protein coding spleen (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 561.00 93.34 2.77 100.0 MIR744-201 miRNA spleen (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 38.00 63.33 0.19 100.0 MIR378C-201 miRNA spleen (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 12744.00 73.54 62.87 80.76 MIR142HG-201 lncRNA spleen (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 16.00 0.09 0.08 100.0 MIR142HG-201 lncRNA spleen (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 345.00 1.99 1.70 6.58 MIR142HG-201 lncRNA spleen (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 112789.00 16.71 556.42 90.97 RPL23A-208 retained intron spleen (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 266.04 0.04 1.31 65.21 RPL23A-208 retained intron spleen (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 150.61 0.02 0.74 45.23 RPL23A-208 retained intron spleen (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 558410.00 82.74 2754.82 88.47 RPL23A-208 retained intron spleen (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 2939.00 3.21 14.50 71.33 RPL17-211 retained intron spleen (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 10778.00 11.78 53.17 50.15 RPL17-211 retained intron spleen (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 1393.00 1.52 6.87 100.0 RPL17-211 retained intron spleen (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 66936.00 73.19 330.22 96.23 RPL17-211 retained intron spleen (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 6230.00 6.81 30.73 93.11 RPL17-211 retained intron spleen (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 467.00 18.29 2.30 25.89 ENST00000582320 lncRNA spleen (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 247.00 9.67 1.22 100.0 ENST00000582320 lncRNA spleen (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 23.00 0.90 0.11 100.0 ENST00000582320 lncRNA spleen (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 7560.00 19.15 37.30 100.0 RPL17-214 retained intron spleen (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 18141.76 45.95 89.50 61.98 RPL17-214 retained intron spleen (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 12023.05 30.45 59.31 39.56 RPL17-214 retained intron spleen (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 375583.00 98.59 1852.87 99.91 SNORD43-201 snoRNA spleen (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 79.00 0.02 0.39 100.0 SNORD43-201 snoRNA spleen (Tissue)