ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 345.00 0.84 1.70 100.0 NOP56-219 retained intron spleen (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 705.00 1.73 3.48 100.0 NOP56-219 retained intron spleen (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 3142.00 7.69 15.50 55.36 NOP56-219 retained intron spleen (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 2923.93 30.04 14.42 45.71 RNA5-8SN2-201 rRNA spleen (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 13.00 0.13 0.06 100.0 RNA5-8SN2-201 rRNA spleen (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 504.00 5.18 2.49 100.0 RNA5-8SN2-201 rRNA spleen (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 9.00 0.09 0.04 100.0 RNA5-8SN2-201 rRNA spleen (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 3414.20 35.08 16.84 53.38 RNA5-8SN2-201 rRNA spleen (Tissue)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 5.00 83.33 0.02 100.0 MIR7974-201 miRNA spleen (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 739.00 1.55 3.65 100.0 U2.3-201 snRNA spleen (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 43.00 0.09 0.21 35.83 U2.3-201 snRNA spleen (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 15.00 0.03 0.07 100.0 U2.3-201 snRNA spleen (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 350.00 0.73 1.73 100.0 U2.3-201 snRNA spleen (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 10292.00 21.55 50.77 100.0 U2.3-201 snRNA spleen (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1170.00 2.53 5.77 100.0 U2.6-201 snRNA spleen (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 105.00 0.20 0.52 8.9 ENST00000619323 lncRNA spleen (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 48942.00 95.35 241.45 97.09 ENST00000619323 lncRNA spleen (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 1182.00 32.18 5.83 100.0 SCARNA4-202 scaRNA spleen (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 1400.00 82.40 6.91 100.0 ENST00000625572 miRNA spleen (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 1805.00 89.98 8.90 100.0 ENST00000630615 snoRNA spleen (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 137.00 58.05 0.68 100.0 DMRT2-209 protein coding spleen (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 16.00 6.78 0.08 100.0 DMRT2-209 protein coding spleen (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 1004.00 48.81 4.95 100.0 SNORD98-201 snoRNA spleen (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 543.00 26.40 2.68 100.0 SNORD98-201 snoRNA spleen (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 87614.24 65.83 432.23 71.93 MIR106AHG-201 lncRNA spleen (Tissue)