ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 409.00 1.10 2.02 100.0 SNHG14-220 retained intron spleen (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 29.00 0.08 0.14 100.0 SNHG14-220 retained intron spleen (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 35570.00 95.83 175.48 100.0 SNHG14-220 retained intron spleen (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 1334.00 99.55 6.58 100.0 TEKT4P2-201 transcribed unprocessed pseudogene spleen (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 24015.00 79.91 118.47 92.19 RPL4-202 retained intron spleen (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 790.00 2.63 3.90 100.0 RPL4-202 retained intron spleen (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 2.00 0.01 0.01 100.0 RPL4-202 retained intron spleen (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 617.00 2.05 3.04 100.0 RPL4-202 retained intron spleen (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 663.00 2.21 3.27 100.0 RPL4-202 retained intron spleen (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 541.00 0.74 2.67 100.0 ENST00000563103 lncRNA spleen (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 4842.00 61.33 23.89 100.0 RPL4-207 retained intron spleen (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 615.00 7.79 3.03 100.0 RPL4-207 retained intron spleen (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 50688.00 92.22 250.06 98.68 ENST00000565336 lncRNA spleen (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 2036.00 3.70 10.04 72.61 ENST00000565336 lncRNA spleen (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 3943.00 25.49 19.45 100.0 RBMX-210 retained intron spleen (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 5302.00 34.28 26.16 100.0 RBMX-210 retained intron spleen (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 53.00 0.34 0.26 10.31 RBMX-210 retained intron spleen (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 655.00 44.11 3.23 100.0 RPL4-214 retained intron spleen (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 1917.58 22.08 9.46 35.88 POLG-DT-202 lncRNA spleen (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 3906.94 44.98 19.27 77.47 POLG-DT-202 lncRNA spleen (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 331.00 3.81 1.63 100.0 POLG-DT-202 lncRNA spleen (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 280.00 22.28 1.38 100.0 ENST00000570843 lncRNA spleen (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 1410.00 80.53 6.96 100.0 MIR497HG-207 lncRNA spleen (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 27646.00 94.67 136.39 95.3 MIR22HG-212 lncRNA spleen (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 685.00 58.85 3.38 71.21 SNORD53B-201 snoRNA spleen (Tissue)