ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 151.00 0.07 0.74 53.55 RNY4-201 misc RNA spleen (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 586.00 0.27 2.89 100.0 RNY4-201 misc RNA spleen (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 16205.00 7.45 79.94 92.74 RNY4-201 misc RNA spleen (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 3493.00 1.61 17.23 74.11 RNY4-201 misc RNA spleen (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 153407.00 70.56 756.81 99.21 RNY4-201 misc RNA spleen (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 29067.00 13.37 143.40 99.23 RNY4-201 misc RNA spleen (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 799.00 0.37 3.94 100.0 RNY4-201 misc RNA spleen (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 529.00 0.24 2.61 49.07 RNY4-201 misc RNA spleen (Tissue)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 377.00 0.17 1.86 100.0 RNY4-201 misc RNA spleen (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 2896.00 76.65 14.29 87.73 MIR3142HG-201 lncRNA spleen (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 2247.00 7.15 11.09 100.0 MIR151A-201 miRNA spleen (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 25634.00 81.56 126.46 89.59 MIR151A-201 miRNA spleen (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 1495.00 99.20 7.38 100.0 DENND3-221 protein coding spleen (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 14413.00 15.24 71.10 36.31 WDR74-204 protein coding spleen (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 16751.00 17.71 82.64 89.55 WDR74-204 protein coding spleen (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 322.00 0.34 1.59 100.0 WDR74-204 protein coding spleen (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 1807.00 1.91 8.91 100.0 WDR74-204 protein coding spleen (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 25278.00 26.73 124.70 63.69 WDR74-204 protein coding spleen (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 1530.00 1.62 7.55 100.0 WDR74-204 protein coding spleen (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 357.00 28.67 1.76 100.0 SCARNA9-201 lncRNA spleen (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 73525.00 97.28 362.72 100.0 TAF1D-215 retained intron spleen (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 187868.00 75.98 926.81 77.7 ENST00000548801 lncRNA spleen (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 952.00 18.41 4.70 100.0 ENST00000554988 lncRNA spleen (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 683.00 13.21 3.37 100.0 ENST00000554988 lncRNA spleen (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 121.00 0.33 0.60 100.0 SNHG14-220 retained intron spleen (Tissue)