ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 517.00 1.95 2.55 100.0 MT-TE-201 Mt tRNA spleen (Tissue)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 40.00 0.15 0.20 100.0 MT-TE-201 Mt tRNA spleen (Tissue)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 4.00 44.44 0.02 100.0 MIR196A1-201 miRNA spleen (Tissue)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 2606.00 47.61 12.86 100.0 MT-RNR1-201 Mt rRNA spleen (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 161.00 67.93 0.79 100.0 MIR454-201 miRNA spleen (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 101.00 56.11 0.50 100.0 MIR501-201 miRNA spleen (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 578.00 90.31 2.85 100.0 MIR769-201 miRNA spleen (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 88.00 86.27 0.43 100.0 KRTAP19-1-201 protein coding spleen (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 1.00 25.00 0.00 100.0 MIR708-201 miRNA spleen (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 5.00 100.00 0.02 100.0 MIR509-3-201 miRNA spleen (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 6.00 85.71 0.03 100.0 MIR301B-201 miRNA spleen (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 658.00 53.15 3.25 81.33 RNU1-82P-201 snRNA spleen (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 288.00 2.35 1.42 100.0 SNORD66-201 snoRNA spleen (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 1482.00 12.07 7.31 100.0 SNORD66-201 snoRNA spleen (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 4173.00 33.98 20.59 66.18 SNORD66-201 snoRNA spleen (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 18.00 31.03 0.09 100.0 U3.17-201 snoRNA spleen (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 5333.00 86.84 26.31 100.0 SNORD17-201 snoRNA spleen (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 597.00 76.74 2.95 100.0 SNORD72-201 snoRNA spleen (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 344.00 66.41 1.70 100.0 SNORD70B-201 snoRNA spleen (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 4297.00 72.93 21.20 95.45 RNY4P18-201 misc RNA spleen (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 17104.00 59.65 84.38 100.0 SNORD69-201 snoRNA spleen (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 3634.00 12.67 17.93 100.0 SNORD69-201 snoRNA spleen (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 4305.00 15.01 21.24 100.0 SNORD69-201 snoRNA spleen (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 839.00 2.93 4.14 100.0 SNORD69-201 snoRNA spleen (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 13043.00 86.37 64.35 91.29 B4GALNT2-202 protein coding spleen (Tissue)