ENCFF400GBK

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR587CPE
Description: Part of ENCODE experiment ENCSR587CPE. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 13043.00 86.37 64.35 91.29 B4GALNT2-202 protein coding spleen (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 596.00 85.02 2.94 100.0 NDE1-202 protein coding spleen (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 20.00 55.56 0.10 100.0 MIR450B-201 miRNA spleen (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 41.00 39.05 0.20 100.0 MIR887-201 miRNA spleen (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 91.00 91.00 0.45 100.0 MIR889-201 miRNA spleen (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 60.00 93.75 0.30 100.0 MIR548K-201 miRNA spleen (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 273.00 71.84 1.35 100.0 MIR320B2-201 miRNA spleen (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 749.00 0.89 3.70 100.0 SNORD100-201 snoRNA spleen (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1959.00 2.32 9.66 100.0 SNORD100-201 snoRNA spleen (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 1787.00 2.12 8.82 100.0 SNORD100-201 snoRNA spleen (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 76291.00 90.54 376.37 100.0 SNORD100-201 snoRNA spleen (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 3317.00 72.76 16.36 100.0 SNORD111B-201 snoRNA spleen (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 400.00 0.60 1.97 100.0 RNU2-36P-201 snRNA spleen (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 808.00 1.22 3.99 100.0 RNU2-36P-201 snRNA spleen (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 1189.00 1.52 5.87 100.0 SNORD19C-201 snoRNA spleen (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 75151.00 96.33 370.74 99.12 SNORD19C-201 snoRNA spleen (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 147.00 3.16 0.73 100.0 SNORD12B-201 snoRNA spleen (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 3641.00 78.28 17.96 100.0 SNORD12B-201 snoRNA spleen (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 31.00 4.45 0.15 100.0 Y_RNA.609-201 misc RNA spleen (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 96.00 56.14 0.47 100.0 Y_RNA.612-201 misc RNA spleen (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 310.00 21.72 1.53 100.0 SNORD71-201 snoRNA spleen (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 230.00 16.12 1.13 100.0 SNORD71-201 snoRNA spleen (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 5552.00 87.34 27.39 94.97 MIR194-2HG-201 lncRNA spleen (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 738.00 11.61 3.64 49.86 MIR194-2HG-201 lncRNA spleen (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 17.00 89.47 0.08 100.0 RPS7P15-201 processed pseudogene spleen (Tissue)