ENCFF381DXM

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR168XPO
Description: Part of ENCODE experiment ENCSR168XPO. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 145.00 0.08 0.56 100.0 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 4991.00 2.68 19.38 96.61 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 3.00 0.55 0.01 27.27 SNHG14-323 lncRNA transverse colon (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 211.00 0.21 0.82 52.49 MEG8-251 lncRNA transverse colon (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 97947.00 96.91 380.33 98.86 MEG8-251 lncRNA transverse colon (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 235.00 0.23 0.91 56.49 MEG8-251 lncRNA transverse colon (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 128.00 0.13 0.50 84.21 MEG8-251 lncRNA transverse colon (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 220.00 0.22 0.85 100.0 MEG8-251 lncRNA transverse colon (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 407.00 28.87 1.58 49.94 SNHG14-336 lncRNA transverse colon (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 880.00 62.41 3.42 88.09 SNHG14-336 lncRNA transverse colon (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 30.00 13.57 0.12 93.75 SNHG14-341 lncRNA transverse colon (Tissue)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 5.00 0.53 0.02 100.0 NCL-216 retained intron transverse colon (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 289.00 36.72 1.12 100.0 FMN2-209 protein coding CDS not defined transverse colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 436.00 1.50 1.69 75.56 LINC02739-203 lncRNA transverse colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 141.00 0.48 0.55 24.44 LINC02739-203 lncRNA transverse colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 63.00 0.22 0.24 100.0 LINC02739-203 lncRNA transverse colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 450.00 1.54 1.75 100.0 LINC02739-203 lncRNA transverse colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 10008.00 34.34 38.86 100.0 LINC02739-203 lncRNA transverse colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 1767.00 6.06 6.86 100.0 LINC02739-203 lncRNA transverse colon (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 14.00 73.68 0.05 100.0 MIR124-1HG-216 lncRNA transverse colon (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 811.00 35.02 3.15 100.0 SNHG10-212 lncRNA transverse colon (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 15955.60 75.12 61.96 80.29 SNHG19-202 lncRNA transverse colon (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 4005.69 18.86 15.55 30.79 SNHG19-202 lncRNA transverse colon (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 2645.00 46.89 10.27 100.0 MIR222HG-206 lncRNA transverse colon (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 1539.00 27.28 5.98 70.24 MIR222HG-206 lncRNA transverse colon (Tissue)