ENCFF381DXM

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR168XPO
Description: Part of ENCODE experiment ENCSR168XPO. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 115.00 0.03 0.45 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 1685.00 0.50 6.54 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 52049.00 15.43 202.11 81.77 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 20.00 0.01 0.08 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 34421.00 10.20 133.66 97.26 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 134.00 0.04 0.52 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 8.00 0.00 0.03 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 1391.00 0.41 5.40 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 664.00 0.20 2.58 90.83 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 535.15 0.16 2.08 56.93 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 2358.00 0.70 9.16 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 240.00 0.07 0.93 60.3 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 1240.00 0.37 4.81 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 126.00 0.04 0.49 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 490.00 30.30 1.90 100.0 SNHG14-315 lncRNA transverse colon (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 191.00 11.81 0.74 83.41 SNHG14-315 lncRNA transverse colon (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 187.00 11.56 0.73 68.75 SNHG14-315 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 759.00 0.41 2.95 100.0 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 49206.03 26.37 191.07 33.09 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 40.00 0.02 0.16 100.0 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 93.00 0.05 0.36 100.0 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 121287.56 65.01 470.96 72.1 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 4950.00 2.65 19.22 79.45 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 14.00 0.01 0.05 100.0 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1328.00 0.71 5.16 100.0 SNHG5-273 lncRNA transverse colon (Tissue)