ENCFF381DXM

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR168XPO
Description: Part of ENCODE experiment ENCSR168XPO. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 354.00 54.63 1.37 100.0 HSPA8-211 retained intron transverse colon (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 125.00 21.70 0.49 100.0 SCARNA9-201 lncRNA transverse colon (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 88.00 0.12 0.34 100.0 TAF1D-215 retained intron transverse colon (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 73738.00 96.89 286.32 100.0 TAF1D-215 retained intron transverse colon (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 17.00 1.36 0.07 100.0 HSPA8-215 retained intron transverse colon (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 871.00 69.57 3.38 100.0 HSPA8-215 retained intron transverse colon (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 3.00 0.24 0.01 100.0 HSPA8-215 retained intron transverse colon (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 249.00 15.89 0.97 100.0 RPS2-215 retained intron transverse colon (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 547860.00 79.54 2127.33 80.77 ENST00000548801 lncRNA transverse colon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 846.00 5.38 3.28 100.0 ENST00000554988 lncRNA transverse colon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 153.00 0.97 0.59 100.0 ENST00000554988 lncRNA transverse colon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 9763.00 62.05 37.91 100.0 ENST00000554988 lncRNA transverse colon (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 190.00 2.43 0.74 100.0 SNHG14-220 retained intron transverse colon (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 218.00 2.79 0.85 100.0 SNHG14-220 retained intron transverse colon (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 471.00 6.03 1.83 100.0 SNHG14-220 retained intron transverse colon (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 6107.00 78.18 23.71 100.0 SNHG14-220 retained intron transverse colon (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 1931.00 99.69 7.50 100.0 TEKT4P2-201 transcribed unprocessed pseudogene transverse colon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 309.00 2.15 1.20 100.0 RPL4-202 retained intron transverse colon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 16.00 0.11 0.06 100.0 RPL4-202 retained intron transverse colon (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 152.00 1.06 0.59 100.0 RPL4-202 retained intron transverse colon (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 646.00 4.50 2.51 100.0 RPL4-202 retained intron transverse colon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 10216.00 71.17 39.67 95.14 RPL4-202 retained intron transverse colon (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 247.00 0.06 0.96 100.0 ENST00000563103 lncRNA transverse colon (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 326.00 2.27 1.27 100.0 RPL4-207 retained intron transverse colon (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 8682.00 60.43 33.71 100.0 RPL4-207 retained intron transverse colon (Tissue)