ENCFF381DXM

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR168XPO
Description: Part of ENCODE experiment ENCSR168XPO. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 41.00 58.57 0.16 100.0 RGS11-208 retained intron transverse colon (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 1257.00 6.24 4.88 93.46 NOP56-217 protein coding CDS not defined transverse colon (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 16081.00 79.87 62.44 89.69 NOP56-217 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 2450.00 1.28 9.51 100.0 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 4151.00 2.16 16.12 100.0 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 191.00 0.10 0.74 46.47 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 220.00 0.11 0.85 53.53 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 162391.00 84.54 630.56 96.28 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 3244.00 1.69 12.60 88.18 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2733.00 1.42 10.61 100.0 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 5176.00 79.75 20.10 100.0 GNL3-211 retained intron transverse colon (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 418.00 6.44 1.62 100.0 GNL3-211 retained intron transverse colon (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 241.00 18.58 0.94 100.0 RPL5-205 retained intron transverse colon (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 226.00 17.42 0.88 100.0 RPL5-205 retained intron transverse colon (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 409.00 4.82 1.59 100.0 ZBED9-AS1-201 lncRNA transverse colon (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 1640.00 89.47 6.37 100.0 RPS3A-206 retained intron transverse colon (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 27988.00 94.32 108.68 100.0 COX7C-203 protein coding transverse colon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 15948.08 15.74 61.93 20.54 RACK1-229 protein coding transverse colon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 75027.52 74.07 291.33 82.84 RACK1-229 protein coding transverse colon (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 5345.00 5.28 20.75 95.53 RACK1-229 protein coding transverse colon (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 343.00 0.34 1.33 100.0 RACK1-229 protein coding transverse colon (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 138025.00 52.93 535.95 82.85 RACK1-230 retained intron transverse colon (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 115798.00 44.41 449.64 68.92 RACK1-230 retained intron transverse colon (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 111.00 2.87 0.43 100.0 RNA5SP486-201 rRNA pseudogene transverse colon (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 8000.00 89.40 31.06 100.0 SCARNA5-201 scaRNA transverse colon (Tissue)