ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 111.00 2.98 0.50 100.0 7SK.1-201 misc RNA stomach (Tissue)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 425.00 11.41 1.92 81.57 7SK.1-201 misc RNA stomach (Tissue)
ENST00000365328.1 ENST00000365328.1_270_331_+ 270–331 206.00 5.53 0.93 58.69 7SK.1-201 misc RNA stomach (Tissue)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 922.00 51.05 4.17 100.0 RNA5SP77-201 rRNA pseudogene stomach (Tissue)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 7611.00 73.15 34.43 100.0 SNORD114-22-201 snoRNA stomach (Tissue)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 2628.00 25.26 11.89 99.47 SNORD114-22-201 snoRNA stomach (Tissue)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 8537.00 78.89 38.62 100.0 SNORD6-201 snoRNA stomach (Tissue)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 370.00 3.42 1.67 100.0 SNORD6-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 3380.37 15.69 15.29 66.96 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 373.00 1.73 1.69 100.0 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 475.00 2.20 2.15 100.0 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 2000.00 9.28 9.05 91.79 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 1394.00 6.47 6.31 100.0 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 8831.00 40.98 39.95 97.72 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 1681.53 7.80 7.61 33.31 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 42479.00 96.65 192.17 98.02 MIR146B-201 miRNA stomach (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 25893.00 96.16 117.14 100.0 SNHG20-201 lncRNA stomach (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 74.00 20.61 0.33 100.0 ATP5MK-205 protein coding stomach (Tissue)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 14.00 3.90 0.06 100.0 ATP5MK-205 protein coding stomach (Tissue)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 5.00 8.62 0.02 100.0 LINC01556-201 lncRNA stomach (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 85.00 32.69 0.38 100.0 ATAD3A-202 protein coding stomach (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 98.00 12.53 0.44 33.91 TMC5-202 protein coding stomach (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 35.00 83.33 0.16 100.0 ZMYM2-203 protein coding stomach (Tissue)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 88.00 6.16 0.40 100.0 RNVU1-7-201 snRNA stomach (Tissue)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 272.00 49.45 1.23 100.0 Y_RNA.389-201 misc RNA stomach (Tissue)