ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_55_+ 1–55 141.00 0.14 0.64 54.86 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 293.00 0.30 1.33 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 111.00 0.11 0.50 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 463.00 0.47 2.09 90.43 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_29_+ 1–29 1103.00 1.12 4.99 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 3938.00 28.34 17.81 54.43 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 1204.00 8.67 5.45 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 811.00 5.95 3.67 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 166307.00 94.99 752.35 99.38 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 126.00 0.07 0.57 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 194.00 0.11 0.88 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 111.00 0.06 0.50 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 161.00 0.09 0.73 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 688.00 5.34 3.11 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 78369.00 80.94 354.53 91.99 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 179.00 1.50 0.81 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 4200.00 47.80 19.00 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 1164.00 13.25 5.27 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 115.00 1.31 0.52 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_33_71_+ 33–71 129.00 1.47 0.58 60.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 110.00 0.00 0.50 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 7524.00 66.28 34.04 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_34_+ 1–34 22.00 2.49 0.10 84.62 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_32_+ 1–32 4.00 0.45 0.02 15.38 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 329.00 5.16 1.49 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA stomach (Tissue)