ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 22.00 0.35 0.10 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 5871.00 73.00 26.56 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 684.00 63.51 3.09 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 306.00 37.64 1.38 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 750.00 1.90 3.39 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 55.00 0.14 0.25 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 3279.00 8.32 14.83 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 79.00 0.20 0.36 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 167.00 0.42 0.76 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 190.00 0.48 0.86 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 2986.00 0.05 13.51 75.54 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 2886.00 0.05 13.06 61.05 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 1328.00 0.02 6.01 95.68 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 49309.00 41.01 223.07 83.33 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 13265.00 96.28 60.01 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 180690.00 94.38 817.42 99.36 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 613.00 88.20 2.77 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 47.00 0.02 0.21 92.16 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 4.00 0.00 0.02 7.84 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 132507.00 69.69 599.44 83.62 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 37115.68 60.04 167.91 76.44 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 10558.08 17.08 47.76 43.65 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 9407.00 15.22 42.56 87.66 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 975371.00 98.49 4412.45 99.83 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 557.00 11.64 2.52 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA stomach (Tissue)