ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 444.00 2.22 2.01 100.0 GAS5-377 lncRNA stomach (Tissue)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 16.00 0.08 0.07 100.0 GAS5-377 lncRNA stomach (Tissue)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 1920.00 9.58 8.69 100.0 GAS5-377 lncRNA stomach (Tissue)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 16816.00 83.90 76.07 100.0 GAS5-377 lncRNA stomach (Tissue)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 17.00 1.20 0.08 100.0 ZFAS1-238 lncRNA stomach (Tissue)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 17.00 1.20 0.08 100.0 ZFAS1-238 lncRNA stomach (Tissue)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 599.00 42.12 2.71 100.0 ZFAS1-238 lncRNA stomach (Tissue)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 3941.00 89.45 17.83 100.0 ZFAS1-242 lncRNA stomach (Tissue)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 238.00 8.03 1.08 100.0 ENST00000837997 lncRNA stomach (Tissue)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 1840.00 62.08 8.32 100.0 ENST00000837997 lncRNA stomach (Tissue)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 6230.00 74.46 28.18 81.35 ENST00000839036 lncRNA stomach (Tissue)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 69.00 12.75 0.31 100.0 ENST00000849527 lncRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 354006.00 95.06 1601.48 98.87 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 33.00 0.01 0.15 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 14.00 0.00 0.06 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 904.00 34.50 4.09 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 1018.00 38.85 4.61 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 66.00 5.08 0.30 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 66.00 2.13 0.30 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 874.00 22.10 3.95 62.43 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 24.00 0.01 0.11 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-159141611 tRNA-transcript-chr1-159141611_3_20_+ 3–20 27.00 61.36 0.12 100.0 TRNA-TRANSCRIPT-CHR1-159141611 Arg tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 23498.00 19.54 106.30 87.77 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 72.00 0.06 0.33 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 3902.00 3.25 17.65 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA stomach (Tissue)