ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 72909.00 95.23 329.83 98.92 MEG8-251 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 506.00 0.66 2.29 35.86 MEG8-251 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 323.00 0.42 1.46 89.23 MEG8-251 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 3.00 0.00 0.01 100.0 MEG8-251 lncRNA stomach (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 270.00 24.11 1.22 100.0 FMN2-209 protein coding CDS not defined stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 49.00 0.67 0.22 100.0 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 20.00 0.27 0.09 15.27 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 283.00 3.86 1.28 100.0 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 2000.00 27.25 9.05 100.0 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 253.00 3.45 1.14 100.0 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 111.00 1.51 0.50 84.73 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 419.00 23.71 1.90 100.0 SNHG10-212 lncRNA stomach (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 3276.00 46.23 14.82 100.0 MIR222HG-206 lncRNA stomach (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 1856.00 26.19 8.40 68.54 MIR222HG-206 lncRNA stomach (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 30.00 0.42 0.14 100.0 MIR222HG-206 lncRNA stomach (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 2073.00 72.10 9.38 100.0 RPSA-216 retained intron stomach (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1550.00 8.03 7.01 83.42 MIR99AHG-370 lncRNA stomach (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 16414.00 85.02 74.25 97.27 MIR99AHG-370 lncRNA stomach (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 70.00 92.11 0.32 100.0 HPS4-237 retained intron stomach (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 30.00 50.85 0.14 100.0 MEG8-253 lncRNA stomach (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 69.00 29.74 0.31 100.0 MEG9-206 lncRNA stomach (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 1.00 0.43 0.00 100.0 MEG9-206 lncRNA stomach (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 17.00 7.33 0.08 100.0 MEG9-206 lncRNA stomach (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 484.00 10.26 2.19 100.0 DNAJC5-203 nonsense mediated decay stomach (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 1312.00 33.03 5.94 100.0 ENST00000707189 TEC stomach (Tissue)