ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 16849.00 3.97 76.22 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 112.00 0.03 0.51 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 1940.00 0.46 8.78 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 34475.00 8.13 155.96 85.45 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 1157.00 0.27 5.23 84.89 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 16.00 0.00 0.07 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 11.00 0.00 0.05 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 4242.00 1.00 19.19 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1349.00 0.32 6.10 83.48 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 747.81 0.18 3.38 41.04 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 1327.00 0.31 6.00 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 1078.00 0.25 4.88 60.36 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 1066.00 0.25 4.82 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 102.00 0.02 0.46 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 2.00 0.00 0.01 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 1192.00 5.95 5.39 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 100.30 0.50 0.45 91.18 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 177.00 0.88 0.80 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 207.00 1.03 0.94 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 3.77 0.02 0.02 3.43 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 9569.00 47.76 43.29 99.94 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 485.00 2.42 2.19 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 2527.00 12.61 11.43 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 223.00 1.11 1.01 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 966.00 1.26 4.37 69.6 MEG8-251 lncRNA stomach (Tissue)