ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 508.34 3.90 1.51 14.38 RNY1-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 142.00 1.09 0.42 100.0 RNY1-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 30.00 0.23 0.09 100.0 RNY1-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 165.00 1.27 0.49 100.0 RNY1-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000364273.1 ENST00000364273.1_2_82_+ 2–82 556.00 35.35 1.66 100.0 SNORD115-42-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 1901.00 1.54 5.66 100.0 RNA5SP202-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 859.00 0.69 2.56 100.0 RNA5SP202-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 412.00 0.33 1.23 100.0 RNA5SP202-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 2869.00 2.32 8.54 100.0 RNA5SP202-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 346.00 0.28 1.03 100.0 RNA5SP202-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 289.00 0.23 0.86 100.0 RNA5SP202-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 1460.42 1.18 4.35 57.59 RNA5SP202-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 4782.25 3.87 14.24 40.53 RNA5SP202-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 1549.31 1.25 4.61 56.5 RNA5SP202-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000364370.1 ENST00000364370.1_35_67_+ 35–67 6564.00 72.27 19.54 100.0 SNORD114-9-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364370.1 ENST00000364370.1_4_67_+ 4–67 1671.00 18.40 4.98 100.0 SNORD114-9-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 6709.00 8.43 19.98 100.0 Y_RNA.234-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 453.00 0.47 1.35 100.0 RNA5S9-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000364461.1 ENST00000364461.1_2_82_+ 2–82 408.00 74.73 1.21 100.0 SNORD115-23-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 73.00 2.58 0.22 100.0 RNA5SP141-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000364687.1 ENST00000364687.1_34_67_+ 34–67 970.00 83.33 2.89 100.0 SNORD114-15-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 72.00 17.48 0.21 100.0 ENST00000364722 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364809.1 ENST00000364809.1_2_81_+ 2–81 636.00 36.55 1.89 100.0 SNORD115-15-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364830.3 ENST00000364830.3_3_67_+ 3–67 941.00 62.15 2.80 100.0 SNORD113-3-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 12686.00 88.71 37.77 100.0 SNORD52-201 snoRNA gastroesophageal sphincter (Tissue)