ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 1054.00 11.57 3.14 24.24 SNORD117-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364915.1 ENST00000364915.1_2_74_+ 2–74 5771.00 63.36 17.18 84.56 SNORD117-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364969.1 ENST00000364969.1_4_62_+ 4–62 57.00 0.40 0.17 100.0 SNORD114-3-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364969.1 ENST00000364969.1_38_71_+ 38–71 853.00 6.04 2.54 100.0 SNORD114-3-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364969.1 ENST00000364969.1_3_71_+ 3–71 12238.00 86.60 36.44 96.31 SNORD114-3-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 88.00 7.01 0.26 100.0 RNA5SP298-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000365037.1 ENST00000365037.1_2_82_+ 2–82 414.00 55.65 1.23 100.0 SNORD115-38-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365073.1 ENST00000365073.1_2_81_+ 2–81 827.00 40.18 2.46 100.0 SNORD115-10-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365080.1 ENST00000365080.1_3_67_+ 3–67 2755.00 84.80 8.20 100.0 SNORD113-9-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365099.1 ENST00000365099.1_2_82_+ 2–82 38.00 26.95 0.11 100.0 SNORD115-20-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 1372.00 4.72 4.09 100.0 SNORD38A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 719.00 2.47 2.14 100.0 SNORD38A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 25694.00 88.44 76.51 100.0 SNORD38A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365178.1 ENST00000365178.1_4_67_+ 4–67 10570.00 88.99 31.47 96.79 SNORD114-20-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 43.00 1.09 0.13 100.0 7SK.1-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 223.00 5.66 0.66 63.9 7SK.1-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 211.00 5.35 0.63 100.0 7SK.1-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000365328.1 ENST00000365328.1_270_331_+ 270–331 293.00 7.43 0.87 67.2 7SK.1-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 116.00 2.94 0.35 100.0 7SK.1-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 571.00 14.49 1.70 81.92 7SK.1-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000365328.1 ENST00000365328.1_260_331_+ 260–331 35.00 0.89 0.10 100.0 7SK.1-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 2671.00 75.28 7.95 100.0 SNORD14C-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365391.1 ENST00000365391.1_2_82_+ 2–82 477.00 61.71 1.42 100.0 SNORD115-44-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 1087.00 72.08 3.24 100.0 RNA5SP77-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 7888.00 27.61 23.49 94.57 SNORD114-22-201 snoRNA gastroesophageal sphincter (Tissue)