ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 1256.00 5.56 3.74 100.0 SNORD104-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 2253.00 61.79 6.71 89.4 SNORD115-9-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 74237.00 81.34 221.04 91.77 RNA5SP358-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 131.00 3.50 0.39 59.82 RNA5SP145-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 10.00 50.00 0.03 100.0 Y_RNA.105-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 62.00 12.38 0.18 100.0 RNY4P9-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 706.00 9.78 2.10 100.0 RNU5B-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 35.00 0.48 0.10 100.0 RNU5B-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 17.00 0.24 0.05 100.0 RNU5B-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 2366.00 32.78 7.04 100.0 RNU5B-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000363293.1 ENST00000363293.1_2_82_+ 2–82 13829.00 89.43 41.18 95.93 SNORD115-18-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 13.00 0.50 0.04 92.86 RNY4P27-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 214.00 8.18 0.64 99.53 RNY4P27-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 914.00 12.84 2.72 100.0 Y_RNA.136-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000363608.1 ENST00000363608.1_2_82_+ 2–82 1214.00 61.97 3.61 100.0 SNORD115-41-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000363633.1 ENST00000363633.1_2_82_+ 2–82 18.00 2.21 0.05 100.0 SNORD115-5-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000363723.1 ENST00000363723.1_2_82_+ 2–82 212.00 59.55 0.63 100.0 SNORD115-33-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 6054.00 89.23 18.03 96.1 SNORD114-25-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 9839.00 96.75 29.30 100.0 SNORD113-7-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000363856.1 ENST00000363856.1_2_82_+ 2–82 250.00 42.44 0.74 100.0 SNORD115-8-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 199.00 23.14 0.59 100.0 Y_RNA.181-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000363887.1 ENST00000363887.1_2_82_+ 2–82 423.00 36.47 1.26 100.0 SNORD115-16-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364079.1 ENST00000364079.1_2_82_+ 2–82 393.00 45.96 1.17 100.0 SNORD115-32-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364117.1 ENST00000364117.1_2_82_+ 2–82 225.00 49.89 0.67 100.0 SNORD115-30-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 142.00 1.09 0.42 100.0 RNY1-201 misc RNA gastroesophageal sphincter (Tissue)