ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 280.00 26.64 0.83 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 266.00 0.62 0.79 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 1139.00 2.65 3.39 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 79.00 0.18 0.24 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 164.00 0.38 0.49 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 985.00 2.29 2.93 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 113.00 0.26 0.34 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 28221.00 12.09 84.03 90.47 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 250.00 0.11 0.74 56.69 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 200.00 0.09 0.60 69.69 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 1466.00 5.79 4.37 78.73 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 2361.00 94.97 7.03 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 121.00 7.08 0.36 74.23 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 55.00 96.49 0.16 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 108.00 0.51 0.32 3.55 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 2937.00 13.87 8.75 96.45 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 3961.00 18.70 11.79 66.91 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 1607.07 17.38 4.79 55.23 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 435.00 4.70 1.30 74.11 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 1257.71 13.60 3.74 44.79 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 42048.00 90.20 125.20 95.25 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 344.00 3.05 1.02 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 3316.00 20.13 9.87 61.61 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 651.00 0.32 1.94 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 3186.00 0.72 9.49 84.8 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA gastroesophageal sphincter (Tissue)