ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 289.00 1.79 0.86 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_29_+ 1–29 316.00 1.96 0.94 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 2578.00 16.00 7.68 96.45 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_55_+ 1–55 166.00 1.03 0.49 13.27 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 3882.00 23.51 11.56 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 3625.00 21.96 10.79 52.23 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 1524.00 11.12 4.54 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 164.00 1.10 0.49 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 84.00 0.57 0.25 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 610.00 4.11 1.82 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 865.00 5.83 2.58 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 8378.00 56.44 24.95 94.25 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 1212.00 9.38 3.61 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 3082.00 28.10 9.18 86.31 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 306.00 2.79 0.91 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 1142.00 18.07 3.40 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 126.00 1.99 0.38 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 177.00 2.80 0.53 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_33_71_+ 33–71 248.00 3.92 0.74 58.49 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 2389.00 1.02 7.11 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 201.00 17.63 0.60 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 1388.00 14.82 4.13 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 11.00 0.12 0.03 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 1754.00 83.01 5.22 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 420.00 54.55 1.25 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA gastroesophageal sphincter (Tissue)