ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000770398.1 ENST00000770398.1_425_456_+ 425–456 213.00 3.26 0.63 100.0 ENST00000770398 lncRNA gastroesophageal sphincter (Tissue)
ENST00000771298.1 ENST00000771298.1_1591_1611_+ 1591–1611 1940.00 7.63 5.78 100.0 ENST00000771298 lncRNA gastroesophageal sphincter (Tissue)
ENST00000771298.1 ENST00000771298.1_448_479_+ 448–479 38.00 0.15 0.11 100.0 ENST00000771298 lncRNA gastroesophageal sphincter (Tissue)
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 15531.00 61.08 46.24 97.04 ENST00000771298 lncRNA gastroesophageal sphincter (Tissue)
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 734.00 2.89 2.19 100.0 ENST00000771298 lncRNA gastroesophageal sphincter (Tissue)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 2018.00 75.52 6.01 100.0 ENST00000772672 lncRNA gastroesophageal sphincter (Tissue)
ENST00000772672.1 ENST00000772672.1_91_113_+ 91–113 3.00 0.11 0.01 100.0 ENST00000772672 lncRNA gastroesophageal sphincter (Tissue)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 129.00 12.18 0.38 100.0 ENST00000773843 lncRNA gastroesophageal sphincter (Tissue)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 109.00 0.03 0.32 100.0 SNHG12-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 229601.00 52.87 683.65 93.57 SNHG12-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 202731.00 46.68 603.64 98.58 SNHG12-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 19489.00 0.73 58.03 100.0 SNHG25-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 2385503.00 88.80 7102.97 90.33 SNHG25-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 968.00 0.04 2.88 100.0 SNHG25-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 420.95 0.02 1.25 52.82 SNHG25-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 480.04 0.02 1.43 57.77 SNHG25-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 538.18 0.02 1.60 38.2 SNHG25-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 10810.00 0.40 32.19 89.59 SNHG25-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 254.00 0.01 0.76 100.0 SNHG25-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000778783.1 ENST00000778783.1_84_171_+ 84–171 48.00 36.09 0.14 100.0 ENST00000778783 lncRNA gastroesophageal sphincter (Tissue)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 632.00 84.95 1.88 88.15 MIR155HG-205 lncRNA gastroesophageal sphincter (Tissue)
ENST00000784740.1 ENST00000784740.1_245_265_+ 245–265 8.00 88.89 0.02 100.0 ENST00000784740 lncRNA gastroesophageal sphincter (Tissue)
ENST00000785178.1 ENST00000785178.1_899_938_+ 899–938 168.00 2.61 0.50 100.0 ENST00000785178 lncRNA gastroesophageal sphincter (Tissue)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 607.00 3.46 1.81 68.67 ENST00000786284 lncRNA gastroesophageal sphincter (Tissue)
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 6308.00 35.93 18.78 100.0 ENST00000786284 lncRNA gastroesophageal sphincter (Tissue)