ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 277.00 1.58 0.82 38.85 ENST00000786284 lncRNA gastroesophageal sphincter (Tissue)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 1870.00 28.57 5.57 85.0 ENST00000788343 lncRNA gastroesophageal sphincter (Tissue)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 8069.96 44.55 24.03 55.04 ENST00000797550 lncRNA gastroesophageal sphincter (Tissue)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 5109.25 28.20 15.21 34.85 ENST00000797550 lncRNA gastroesophageal sphincter (Tissue)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 493.00 2.72 1.47 72.93 ENST00000797550 lncRNA gastroesophageal sphincter (Tissue)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 26339.00 87.10 78.43 96.26 MIR181A1HG-212 lncRNA gastroesophageal sphincter (Tissue)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 50.00 0.17 0.15 100.0 MIR181A1HG-212 lncRNA gastroesophageal sphincter (Tissue)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 66.00 23.40 0.20 100.0 C19orf48P-218 lncRNA gastroesophageal sphincter (Tissue)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 137.00 48.58 0.41 100.0 C19orf48P-218 lncRNA gastroesophageal sphincter (Tissue)
ENST00000815283.1 ENST00000815283.1_298_361_+ 298–361 3349.00 71.67 9.97 94.02 SNHG18-220 lncRNA gastroesophageal sphincter (Tissue)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 748.00 21.37 2.23 100.0 ENST00000817026 lncRNA gastroesophageal sphincter (Tissue)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 7.00 0.05 0.02 100.0 ENST00000823279 lncRNA gastroesophageal sphincter (Tissue)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 209.60 1.44 0.62 53.47 ENST00000823279 lncRNA gastroesophageal sphincter (Tissue)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 333.86 2.29 0.99 68.98 ENST00000823279 lncRNA gastroesophageal sphincter (Tissue)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 40.00 0.27 0.12 100.0 ENST00000823279 lncRNA gastroesophageal sphincter (Tissue)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 2787.00 19.16 8.30 99.39 ENST00000823279 lncRNA gastroesophageal sphincter (Tissue)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 295.17 2.03 0.88 52.06 ENST00000823279 lncRNA gastroesophageal sphincter (Tissue)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 192.05 1.32 0.57 26.34 ENST00000823279 lncRNA gastroesophageal sphincter (Tissue)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 159.00 1.09 0.47 80.3 ENST00000823279 lncRNA gastroesophageal sphincter (Tissue)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 102.85 0.71 0.31 21.88 ENST00000823279 lncRNA gastroesophageal sphincter (Tissue)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 446.99 3.07 1.33 70.73 ENST00000823801 lncRNA gastroesophageal sphincter (Tissue)
ENST00000827714.1 ENST00000827714.1_110_129_+ 110–129 917.00 67.33 2.73 86.27 ENST00000827714 lncRNA gastroesophageal sphincter (Tissue)
ENST00000827714.1 ENST00000827714.1_110_131_+ 110–131 146.00 10.72 0.43 13.73 ENST00000827714 lncRNA gastroesophageal sphincter (Tissue)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 2891.00 8.51 8.61 100.0 GAS5-377 lncRNA gastroesophageal sphincter (Tissue)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 7.00 0.02 0.02 100.0 GAS5-377 lncRNA gastroesophageal sphincter (Tissue)