ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000384918.1 ENST00000384918.1_54_75_+ 54–75 222281.00 92.14 661.85 94.31 MIR28-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384918.1 ENST00000384918.1_14_35_+ 14–35 1317.00 0.55 3.92 86.08 MIR28-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384958.1 ENST00000384958.1_27_48_+ 27–48 43.00 70.49 0.13 100.0 MIR183-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384967.1 ENST00000384967.1_16_38_+ 16–38 10087.00 69.11 30.03 100.0 MIR145-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384967.1 ENST00000384967.1_56_76_+ 56–76 1694.00 11.61 5.04 100.0 MIR145-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384988.1 ENST00000384988.1_15_36_+ 15–36 7454.00 98.00 22.19 98.99 MIR186-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384997.3 ENST00000384997.3_57_79_+ 57–79 4.00 100.00 0.01 100.0 MIR200B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384999.1 ENST00000384999.1_25_46_+ 25–46 30.00 13.10 0.09 100.0 MIR218-1-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385004.1 ENST00000385004.1_16_38_+ 16–38 2524.00 93.90 7.52 97.04 MIR181B2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385010.3 ENST00000385010.3_50_71_+ 50–71 4.00 66.67 0.01 100.0 MIR495-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385011.1 ENST00000385011.1_27_48_+ 27–48 352230.00 86.69 1048.79 87.24 MIR10B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385018.1 ENST00000385018.1_51_71_+ 51–71 39.58 45.50 0.12 51.4 MIR130B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385018.1 ENST00000385018.1_13_34_+ 13–34 6.00 6.90 0.02 100.0 MIR130B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385018.1 ENST00000385018.1_51_73_+ 51–73 29.66 34.09 0.09 50.27 MIR130B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385019.1 ENST00000385019.1_6_28_+ 6–28 1265.00 19.50 3.77 100.0 MIR199A1-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385021.3 ENST00000385021.3_51_72_+ 51–72 9.00 69.23 0.03 100.0 MIR487B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385024.1 ENST00000385024.1_11_33_+ 11–33 329.81 52.77 0.98 56.28 MIR93-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385024.1 ENST00000385024.1_11_31_+ 11–31 245.32 39.25 0.73 48.01 MIR93-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385025.1 ENST00000385025.1_20_41_+ 20–41 317.00 84.76 0.94 98.45 MIR532-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385045.1 ENST00000385045.1_20_41_+ 20–41 48.00 88.89 0.14 100.0 MIR15B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385048.3 ENST00000385048.3_16_37_+ 16–37 267.00 76.95 0.80 100.0 MIR150-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385050.3 ENST00000385050.3_53_74_+ 53–74 6.00 31.58 0.02 100.0 MIR542-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385051.1 ENST00000385051.1_51_71_+ 51–71 24.00 7.64 0.07 100.0 MIR500A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385051.1 ENST00000385051.1_52_74_+ 52–74 218.00 69.43 0.65 100.0 MIR500A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385092.1 ENST00000385092.1_6_25_+ 6–25 7312.00 29.49 21.77 94.17 MIR30A-201 miRNA gastroesophageal sphincter (Tissue)