ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385092.1 ENST00000385092.1_47_68_+ 47–68 1965.00 7.92 5.85 100.0 MIR30A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385092.1 ENST00000385092.1_6_21_+ 6–21 226.00 0.91 0.67 100.0 MIR30A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385092.1 ENST00000385092.1_6_25_+ 6–25 7312.00 29.49 21.77 94.17 MIR30A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385129.3 ENST00000385129.3_61_80_+ 61–80 114140.00 91.25 339.86 94.49 MIR27B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385129.3 ENST00000385129.3_19_40_+ 19–40 971.00 0.78 2.89 100.0 MIR27B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385189.3 ENST00000385189.3_25_47_+ 25–47 2.00 100.00 0.01 100.0 MIR196A2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385196.1 ENST00000385196.1_15_36_+ 15–36 2.00 100.00 0.01 100.0 MIR577-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385199.1 ENST00000385199.1_51_70_+ 51–70 42.00 46.15 0.13 85.71 MIR654-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385200.3 ENST00000385200.3_33_54_+ 33–54 381.00 94.31 1.13 96.7 MIR204-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 1520.00 93.65 4.53 100.0 MIR152-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385219.1 ENST00000385219.1_23_45_+ 23–45 1.00 50.00 0.00 100.0 MIR138-1-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 1765.00 89.19 5.26 100.0 MIR30C1-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 17.00 47.22 0.05 100.0 MIR660-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385236.1 ENST00000385236.1_55_76_+ 55–76 2672.00 9.76 7.96 100.0 MIR125B1-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385236.1 ENST00000385236.1_15_37_+ 15–37 18331.00 66.98 54.58 82.96 MIR125B1-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385254.3 ENST00000385254.3_57_78_+ 57–78 1.00 10.00 0.00 100.0 MIR493-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385254.3 ENST00000385254.3_16_37_+ 16–37 7.00 70.00 0.02 100.0 MIR493-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 555.83 26.36 1.66 31.42 MIR182-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 1063.85 50.44 3.17 53.51 MIR182-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 27477.00 89.37 81.81 91.17 MIR100-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 191.00 96.46 0.57 100.0 MIR301A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 5228.00 85.20 15.57 92.16 MIR130A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 875.00 14.26 2.61 43.12 MIR130A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 143579.00 98.45 427.51 98.9 MIRLET7F2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 102.00 77.27 0.30 100.0 MIR652-201 miRNA gastroesophageal sphincter (Tissue)