ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 3799.00 2.33 11.31 83.6 SNORD101-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 44173.00 97.77 131.53 100.0 SNORD37-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 701260.00 95.40 2088.04 99.24 SNORD59A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384360.1 ENST00000384360.1_1_47_+ 1–47 333.00 45.24 0.99 100.0 SNORA7B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384390.1 ENST00000384390.1_1_87_+ 1–87 240.00 63.16 0.71 100.0 SNORD14D-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 45.00 9.13 0.13 100.0 Y_RNA.555-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 2493.00 88.59 7.42 91.45 MIR25-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 35944.00 95.46 107.03 98.69 MIR99B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384832.1 ENST00000384832.1_58_78_+ 58–78 5844.00 37.76 17.40 80.26 MIR23B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384832.1 ENST00000384832.1_58_81_+ 58–81 9045.00 58.44 26.93 82.5 MIR23B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384836.1 ENST00000384836.1_66_87_+ 66–87 18.00 9.09 0.05 100.0 MIR203A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384849.1 ENST00000384849.1_65_85_+ 65–85 4499.00 83.56 13.40 89.93 MIR199B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384849.1 ENST00000384849.1_26_48_+ 26–48 208.00 3.86 0.62 100.0 MIR199B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384850.1 ENST00000384850.1_17_38_+ 17–38 1268.00 94.84 3.78 100.0 MIR30B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384853.1 ENST00000384853.1_36_58_+ 36–58 972.00 97.89 2.89 100.0 MIR181D-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384858.1 ENST00000384858.1_27_48_+ 27–48 11.00 100.00 0.03 100.0 MIR215-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384863.1 ENST00000384863.1_77_98_+ 77–98 195.00 0.70 0.58 100.0 MIR181A2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384873.3 ENST00000384873.3_16_38_+ 16–38 116371.00 98.96 346.50 99.52 MIR191-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384879.1 ENST00000384879.1_15_37_+ 15–37 42.00 64.62 0.13 64.62 MIR149-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384881.1 ENST00000384881.1_27_48_+ 27–48 873.00 95.62 2.60 98.42 MIR181C-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384881.1 ENST00000384881.1_66_87_+ 66–87 17.00 1.86 0.05 100.0 MIR181C-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384892.1 ENST00000384892.1_15_36_+ 15–36 19.00 79.17 0.06 100.0 MIR194-1-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384893.1 ENST00000384893.1_52_72_+ 52–72 326.00 82.12 0.97 84.68 MIR128-2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384906.1 ENST00000384906.1_13_34_+ 13–34 3899.00 82.24 11.61 88.29 MIR99A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384918.1 ENST00000384918.1_14_35_+ 14–35 1317.00 0.55 3.92 86.08 MIR28-201 miRNA gastroesophageal sphincter (Tissue)