ENCFF316MTC

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 52624.00 25.08 337.83 97.25 MIR222HG-206 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 3408.00 1.62 21.88 100.0 MIR222HG-206 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 13163.25 3.99 84.50 52.8 MIR302CHG-205 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_485_+ 458–485 56.00 0.02 0.36 100.0 MIR302CHG-205 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_313_335_+ 313–335 5518.00 1.67 35.42 43.01 MIR302CHG-205 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_190_212_+ 190–212 14762.33 4.47 94.77 52.34 MIR302CHG-205 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_313_333_+ 313–333 7311.00 2.22 46.93 71.19 MIR302CHG-205 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_493_514_+ 493–514 89409.00 27.09 573.98 100.0 MIR302CHG-205 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 65798.00 19.94 422.41 97.72 MIR302CHG-205 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 78980.00 23.93 507.03 89.47 MIR302CHG-205 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_490_+ 458–490 12.00 0.00 0.08 100.0 MIR302CHG-205 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_481_+ 458–481 15710.00 4.76 100.85 33.5 MIR302CHG-205 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 99.00 20.75 0.64 100.0 RPSA-216 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1.00 3.33 0.01 100.0 MIR99AHG-370 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 27.00 90.00 0.17 100.0 MIR99AHG-370 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 15280.00 98.77 98.09 100.0 HPS4-237 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 7.00 41.18 0.04 100.0 MEG8-253 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 8.00 26.67 0.05 100.0 MEG9-206 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 3.00 10.00 0.02 100.0 MEG9-206 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 3.00 10.00 0.02 100.0 MEG9-206 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 6704.00 12.64 43.04 100.0 DNAJC5-203 nonsense mediated decay trophoblast cell (In vitro differentiated cells)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 713.00 7.64 4.58 100.0 ENST00000707189 TEC trophoblast cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 3.00 0.00 0.02 100.0 MIR17HG-214 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 1642647.85 64.03 10545.36 70.45 MIR17HG-214 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 8380.00 0.33 53.80 100.0 MIR17HG-214 lncRNA trophoblast cell (In vitro differentiated cells)